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ASM283673v1

Organism name:
Psychrobacter sp. 4Bb (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 4Bb
BioSample:
SAMN08125736
BioProject:
PRJNA420923
Submitter:
University of Alaska Fairbanks
Date:
2018/01/05
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_002836735.1 (latest)
RefSeq assembly accession:
GCF_002836735.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PJAS01
Assembly method:
Unicycler v. 0.3.1
Expected final version:
no
Genome coverage:
13x
Sequencing technology:
Illumina MiSeq

IDs: 1511811 [UID] 5843258 [GenBank] 5877048 [RefSeq]

See Genome Information for Psychrobacter sp. 4Bb

Pathogen Detection Resources

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria available from Dr. Eric Collins, University of Alaska Fairbanks.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::12/07/2017 14:00:52
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,863
CDS (total)::2,813
Genes (coding)::2,759
CDS (coding)::2,759
Genes (RNA)::50
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs:: 
tRNAs::43
ncRNAs::4
Pseudo Genes (total)::54
Pseudo Genes (ambiguous residues)::0 of 54
Pseudo Genes (frameshifted)::15 of 54
Pseudo Genes (incomplete)::30 of 54
Pseudo Genes (internal stop)::17 of 54
Pseudo Genes (multiple problems)::7 of 54
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,360,326
Total ungapped length3,360,326
Number of contigs77
Contig N50127,688
Contig L5010
Total number of chromosomes and plasmids6
Number of component sequences (WGS or clone)77

Supplemental Content

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002836755.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Plasmid unnamed1CM009109.1=NZ_CM009109.10
Plasmid unnamed2CM009110.1=NZ_CM009110.10
Plasmid unnamed3CM009111.1=NZ_CM009111.10
Plasmid unnamed4CM009112.1=NZ_CM009112.10
Plasmid unnamed5CM009113.1=NZ_CM009113.10
Plasmid unnamed6CM009114.1=NZ_CM009114.10
unplacedn/an/an/a71

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
All3,360,326773,360,326127,68800
Plasmid unnamed120,934120,93420,93400
Plasmid unnamed215,219115,21915,21900
Plasmid unnamed35,13315,1335,13300
Plasmid unnamed44,68514,6854,68500
Plasmid unnamed54,22714,2274,22700
Plasmid unnamed62,15112,1512,15100
unplaced3,307,977713,307,977127,68800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Psychrobacter sp. 4BbPsychrobacter sp. 4Bb

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_904846455.1Psychrobacter proteolyticustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type92.8679.2687.69

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna