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IDs: 461708 [UID] 232428 [GenBank] 461708 [RefSeq]
Enterococcus faecalis TX1346 (No 16S rRNA gene available) is a member of the Firmicutes division of the domain bacteria and region of isolation is GI tract. This is a reference genome for the Human Microbiome Project. This project is co-owned ... with the Human Microbiome Project DACC. Bacteria and source DNA were provided by Professor Barbara E. Murray, M.D. (Director, Division of Infectious Diseases, Department of Internal Medicine, University of Texas Medical School at Houston, MSB 2.112, 6431 Fannin St, Houston, TX 77030, USA). Funded by the NIH grant R01 AI067861 and R37 AI47923 from the Division of Microbiology and Infectious Diseases, NIAID. Coding sequences were predicted using GeneMark v3.3 and Glimmer2 v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and Rfam v8.0. Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs. The National Human Genome Research Institute (NHGRI), National Institutes of Health (NIH) is funding the sequence characterization of the Enterococcus faecalis TX1346 genome. Annotation was added to the contigs in December 2010. Product names were updated in June 2013 more
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