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Fuso_necr_1_1_36S_V1

Organism name:
Fusobacterium necrophorum subsp. funduliforme 1_1_36S (fusobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 1_1_36S
BioSample:
SAMN02463865
BioProject:
PRJNA46417
Submitter:
Broad Institute
Date:
2012/01/11
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • annotation fails completeness check
  • many frameshifted proteins
GenBank assembly accession:
GCA_000242215.1 (latest)
RefSeq assembly accession:
GCF_000242215.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ADLZ01
Assembly method:
Newbler v. 2.3-PostRelease-11/19/2009
Genome coverage:
35x
Sequencing technology:
454

IDs: 328778 [UID] 327248 [GenBank] 328778 [RefSeq]

See Genome Information for Fusobacterium necrophorum

There are 88 assemblies for this organism

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History (Show revision history)

Comment

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC.
Source DNA provided by Ambrose, C., Strauss, J.C., and Allen-Vercoe, E. (Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, ... N1G 2W1, Canada).
Bacteria provided by Ambrose, C., Strauss, J.C., and Allen-Vercoe, E. (Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, N1G 2W1, Canada). 
Please be aware that the annotation is done automatically with little or no manual curation.
Gene Calling Method: Prodigal.  more

Global statistics

Total sequence length2,312,695
Total ungapped length2,300,852
Gaps between scaffolds0
Number of scaffolds15
Scaffold N50743,670
Scaffold L502
Number of contigs40
Contig N50130,133
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)40

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,312,695152,300,852743,670250

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Fusobacterium necrophorum subsp. funduliforme 1_1_36SFusobacterium necrophorum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_008801775.1Fusobacterium necrophorum subsp. funduliformetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_008801775.1Fusobacterium necrophorumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.7581.5988.36
Best-match type98.7581.5988.36

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna