U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM18562v1

Organism name:
Eggerthella sp. 1_3_56FAA (actinobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 1_3_56FAA
BioSample:
SAMN02463797
BioProject:
PRJNA40023
Submitter:
Broad Institute
Date:
2011/01/14
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000185625.1 (latest)
RefSeq assembly accession:
GCF_000185625.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ACWN01
Assembly method:
Newbler v. 2.1-PreRelease-4/28/2009
Genome coverage:
31x
Sequencing technology:
454

IDs: 241878 [UID] 245218 [GenBank] 241878 [RefSeq]

See Genome Information for Eggerthella sp. 1_3_56FAA

History (Show revision history)

Comment

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC.
Source DNA provided by Daigneault, M., Strauss, J.C., Ambrose, C., and Allen-Vercoe, E. (Molecular and Cellular Biology, University of Guelph, ... Guelph, Ontario, N1G 2W1, Canada).
Bacteria provided by Daigneault, M., Strauss, J.C., Ambrose, C., and Allen-Vercoe, E. (Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, N1G 2W1, Canada). 
Please be aware that the annotation is done automatically with little or no manual curation.
Gene calling method: Glimmer; Metagene; PFAM; BLAST to non-redundant protein database; manual curation.  more

Global statistics

Total sequence length3,453,272
Total ungapped length3,388,691
Gaps between scaffolds0
Number of scaffolds28
Scaffold N501,166,492
Scaffold L502
Number of contigs159
Contig N5048,999
Contig L5020
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)159

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,453,272283,388,6911,166,4921310

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Eggerthella sp. 1_3_56FAAEggerthella sp. 1_3_56FAA

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000024265.1Eggerthella lentatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.4184.4678.80

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna