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Cenococcum geophilum 1.58 v2.0

Organism name:
Cenococcum geophilum 1.58 (ascomycete fungi)
Infraspecific name:
Strain: 1.58
BioSample:
SAMN04110467
BioProject:
PRJNA196023
Submitter:
DOE Joint Genome Institute
Date:
2016/07/26
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_001692895.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
LKKR01
Assembly method:
Allpaths-LG v. R36892
Genome coverage:
75.0x
Sequencing technology:
Illumina; Pacbio

IDs: 774561 [UID] 3360588 [GenBank]

See Genome Information for Cenococcum geophilum

History (Show revision history)

Comment

URL -- http://genome.jgi.doe.gov/Cenge3
JGI Project ID: 402530
The DNA was provided by Martina Peter(martina.peter@wsl.ch)
The strain is available from Martina Peter
Contacts: Martina Peter (martina.peter@wsl.ch)
Assembly and annotation done by JGI.
The JGI and collaborators endorse the principles for the distribution and use of large ... scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)  more

Global statistics

Total sequence length177,557,160
Total ungapped length177,413,650
Gaps between scaffolds0
Number of scaffolds268
Scaffold N502,235,929
Scaffold L5026
Number of contigs625
Contig N50938,672
Contig L5063
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)625

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced177,557,160268177,413,6502,235,9293570