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ASM241938v1

Organism name:
Geobacter sp. UBA5735 (bacteria)
Taxonomy check:
Inconclusive
Isolate:
UBA5735
BioSample:
SAMN06453308
BioProject:
PRJNA348753
Submitter:
University of Queensland
Date:
2017/10/03
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
GenBank assembly accession:
GCA_002419385.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
DIFZ01
Assembly method:
CLC de novo assembler v. 4.4.1
Expected final version:
yes
Genome coverage:
178.42x
Sequencing technology:
Illumina

IDs: 1258761 [UID] 5162068 [GenBank]

See Genome Information for Geobacter sp. UBA5735

History (Show revision history)

Comment

Global statistics

Total sequence length3,077,684
Total ungapped length3,077,150
Gaps between scaffolds0
Number of scaffolds70
Scaffold N5068,069
Scaffold L5015
Number of contigs76
Contig N5068,069
Contig L5015
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)70

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,077,684703,077,15068,06960

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Geobacter sp. UBA5735Geobacter sp. UBA5735

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000016745.1Geotalea uraniireducenstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.041.420.85

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena