U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM248254v1

Organism name:
Sporomusaceae bacterium UBA7701 (firmicutes)
Taxonomy check:
Inconclusive
Isolate:
UBA7701
BioSample:
SAMN06451211
BioProject:
PRJNA348753
Submitter:
University of Queensland
Date:
2017/10/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_002482545.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
DLGF01
Assembly method:
CLC de novo assembler v. 4.4.1
Expected final version:
yes
Genome coverage:
45.82x
Sequencing technology:
Illumina

IDs: 1292501 [UID] 5230348 [GenBank]

See Genome Information for Sporomusaceae bacterium UBA7701

History (Show revision history)

Comment

Global statistics

Total sequence length3,580,469
Total ungapped length3,580,046
Gaps between scaffolds0
Number of scaffolds25
Scaffold N50276,107
Scaffold L505
Number of contigs28
Contig N50262,003
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)25

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,580,469253,580,046276,10730

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Sporomusaceae bacterium UBA7701Sporomusaceae bacterium UBA7701

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_023155275.1Streptomyces rhizoryzaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.260.020.01

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena