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ASM234056v1

Organism name:
Candidatus Ruthia sp. UBA2551 (g-proteobacteria)
Taxonomy check:
Inconclusive
Isolate:
UBA2551
BioSample:
SAMN06452031
BioProject:
PRJNA348753
Submitter:
University of Queensland
Date:
2017/09/22
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
GenBank assembly accession:
GCA_002340565.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
DDMH01
Assembly method:
CLC de novo assembler v. 4.4.1
Expected final version:
yes
Genome coverage:
14.78x
Sequencing technology:
Illumina

IDs: 1218671 [UID] 5062298 [GenBank]

See Genome Information for Candidatus Ruthia sp. UBA2551

History (Show revision history)

Comment

Global statistics

Total sequence length929,368
Total ungapped length912,846
Gaps between scaffolds0
Number of scaffolds122
Scaffold N5010,000
Scaffold L5030
Number of contigs166
Contig N508,756
Contig L5034
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)122

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced929,368122912,84610,000440

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Ruthia sp. UBA2551Candidatus Ruthia sp. UBA2551

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_910595815.1Candidatus Thioglobus plumaesuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type88.8375.9568.41

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna