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ASM166726v1

Organism name:
Mycobacterium sp. ACS4331 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: ACS4331
BioSample:
SAMN04634265
BioProject:
PRJNA305922
Submitter:
JCVI
Date:
2016/06/17
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001667265.1 (latest)
RefSeq assembly accession:
GCF_001667265.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LZHW01
Assembly method:
SPAdes v. 3.1.1
Expected final version:
no
Genome coverage:
212.69x
Sequencing technology:
Illumina NextSeq 500

IDs: 758931 [UID] 3305348 [GenBank] 3403968 [RefSeq]

See Genome Information for Mycobacterium sp. ACS4331

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/10/2016 12:48:19
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,348
CDS (total)::5,296
Genes (coding)::5,193
CDS (coding)::5,193
Genes (RNA)::52
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::46
ncRNAs::3
Pseudo Genes (total)::103
Pseudo Genes (ambiguous residues)::0 of 103
Pseudo Genes (frameshifted)::14 of 103
Pseudo Genes (incomplete)::86 of 103
Pseudo Genes (internal stop)::4 of 103
Pseudo Genes (multiple problems)::1 of 103
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,755,083
Total ungapped length5,755,083
Number of contigs114
Contig N5077,587
Contig L5021
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)114

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,755,0831145,755,08377,58700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Mycobacterium sp. ACS4331Mycobacterium sp. ACS4331

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002102105.1Mycolicibacterium confluentistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type90.2283.5082.26

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna