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ASM183066v1

Organism name:
Sulfuricurvum sp. RIFCSPHIGHO2_12_FULL_44_8 (e-proteobacteria)
Taxonomy check:
OK
BioSample:
SAMN04316127
BioProject:
PRJNA288027
Submitter:
Banfield Lab, University of California, Berkeley
Date:
2016/10/21
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • fragmented assembly
GenBank assembly accession:
GCA_001830665.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
MIBP01
Assembly method:
IDBA_UD v. 06.01.2014s
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq2000

IDs: 848241 [UID] 3587428 [GenBank]

See Genome Information for Sulfuricurvum sp. RIFCSPHIGHO2_12_FULL_44_8

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/08/2016 23:53:57
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,163
CDS (total)::2,132
Genes (coding)::1,119
CDS (coding)::1,119
Genes (RNA)::31
rRNAs::1 (23S)
complete rRNAs::
partial rRNAs::1 (23S)
tRNAs::28
ncRNAs::2
Pseudo Genes (total)::1,013
Pseudo Genes (ambiguous residues)::347 of 1,013
Pseudo Genes (frameshifted)::11 of 1,013
Pseudo Genes (incomplete)::755 of 1,013
Pseudo Genes (internal stop)::8 of 1,013
Pseudo Genes (multiple problems)::108 of 1,013
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,636,743
Total ungapped length1,602,783
Gaps between scaffolds0
Number of scaffolds731
Scaffold N502,534
Scaffold L50200
Number of contigs1,278
Contig N501,718
Contig L50297
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)731

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,636,7437311,602,7832,5345470

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Sulfuricurvum sp. RIFCSPHIGHO2_12_FULL_44_8Sulfuricurvum sp. RIFCSPHIGHO2_12_FULL_44_8

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000183725.1Sulfuricurvum kujiensetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.5220.1411.48

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna