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ASM178673v1

Organism name:
Candidatus Nomurabacteria bacterium GWB1_40_6 (bacteria)
Taxonomy check:
Inconclusive
BioSample:
SAMN04314242
BioProject:
PRJNA288027
Submitter:
Banfield Lab, University of California, Berkeley
Date:
2016/10/19
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_001786735.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
MFTD01
Assembly method:
IDBA_UD v. 06.01.2014s
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq2000

IDs: 826271 [UID] 3542808 [GenBank]

See Genome Information for Candidatus Nomurabacteria bacterium GWB1_40_6

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/07/2016 18:25:50
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::656
CDS (total)::620
Genes (coding)::501
CDS (coding)::501
Genes (RNA)::36
rRNAs::1, 1 (5S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::1 (23S)
tRNAs::33
ncRNAs::1
Pseudo Genes (total)::119
Pseudo Genes (ambiguous residues)::44 of 119
Pseudo Genes (frameshifted)::1 of 119
Pseudo Genes (incomplete)::82 of 119
Pseudo Genes (internal stop)::0 of 119
Pseudo Genes (multiple problems)::8 of 119
##Genome-Annotation-Data-END##

Global statistics

Total sequence length539,899
Total ungapped length534,163
Gaps between scaffolds0
Number of scaffolds49
Scaffold N5012,204
Scaffold L5015
Number of contigs137
Contig N506,152
Contig L5028
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)49

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced539,89949534,16312,204880

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Nomurabacteria bacterium GWB1_40_6Candidatus Nomurabacteria bacterium GWB1_40_6

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
none-foundnana

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match typena0.000.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivenana