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IMG-taxon 2639762620 annotated assembly

Organism name:
Leifsonia sp. 98AMF (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 98AMF
BioSample:
SAMN04515691
BioProject:
PRJEB17453
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/11/01
Assembly type:
na
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_900114505.1 (latest)
RefSeq assembly accession:
GCF_900114505.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
246x

IDs: 880831 [UID] 3701408 [GenBank] 4870528 [RefSeq]

See Genome Information for Leifsonia sp. 98AMF

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/12/2024 01:58:23
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,007
CDSs (total)::3,956
Genes (coding)::3,946
CDSs (with protein)::3,946
Genes (RNA)::51
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::45
ncRNAs::3
Pseudo Genes (total)::10
CDSs (without protein)::10
Pseudo Genes (ambiguous residues)::0 of 10
Pseudo Genes (frameshifted)::4 of 10
Pseudo Genes (incomplete)::7 of 10
Pseudo Genes (internal stop)::1 of 10
Pseudo Genes (multiple problems)::1 of 10
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,141,231
Total ungapped length4,141,121
Gaps between scaffolds0
Number of scaffolds1
Scaffold N504,141,231
Scaffold L501
Number of contigs2
Contig N503,102,601
Contig L501
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_900114504.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome ILT630032.1=NZ_LT630032.1

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome I4,141,23114,141,1214,141,23120

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Leifsonia sp. 98AMFLeifsonia sp. 98AMF

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_013408745.1Leifsonia solitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type90.3075.7380.06

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna