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ASM176896v1

Organism name:
archaeon RBG_16_50_20 (archaea)
Taxonomy check:
Inconclusive
BioSample:
SAMN04316260
BioProject:
PRJNA288027
Submitter:
Banfield Lab, University of California, Berkeley
Date:
2016/10/18
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_001768965.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
MEMY01
Assembly method:
IDBA_UD v. 06.01.2014s
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq2000

IDs: 817391 [UID] 3524968 [GenBank]

See Genome Information for archaeon RBG_16_50_20

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/06/2016 15:19:34
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,517
CDS (total)::1,505
Genes (coding)::1,297
CDS (coding)::1,297
Genes (RNA)::12
rRNAs::1 (16S)
complete rRNAs::
partial rRNAs::1 (16S)
tRNAs::9
ncRNAs::2
Pseudo Genes (total)::208
Pseudo Genes (ambiguous residues)::74 of 208
Pseudo Genes (frameshifted)::10 of 208
Pseudo Genes (incomplete)::133 of 208
Pseudo Genes (internal stop)::5 of 208
Pseudo Genes (multiple problems)::14 of 208
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,337,444
Total ungapped length1,316,392
Gaps between scaffolds0
Number of scaffolds113
Scaffold N5012,664
Scaffold L5029
Number of contigs349
Contig N508,523
Contig L5041
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)113

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,337,4441131,316,39212,6642360

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
archaeon RBG_16_50_20archaeon RBG_16_50_20

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
none-foundnana

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match typena0.000.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivenana