History (Show revision history)

Comment

The WUSC is a large strain collection isolated from clinical samples. Each sample is associated with metadata, including source, isolation site, 16s rRNA, metabolic, and other phenotypic information. The goal is to sample an adequate number of important, yet ... minor species, further adding to the catelogue of sequenced bacterial genomes and improving the diversity of the genomes available to the public. WGS will be preformed on approximely 550 isolates. Samples were selected based on RDP analysis at the genus level. This is a reference genomes for the Human Microbiome Project and the work was funded by the National Institutes of Health (NIH) grant U54 HG004968.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/03/2016 07:55:40
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,306
CDS (total)::2,252
Genes (coding)::2,188
CDS (coding)::2,188
Genes (RNA)::54
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
partial rRNAs:: 
tRNAs::45
ncRNAs::3
Pseudo Genes (total)::64
Pseudo Genes (ambiguous residues)::0 of 64
Pseudo Genes (frameshifted)::38 of 64
Pseudo Genes (incomplete)::19 of 64
Pseudo Genes (internal stop)::12 of 64
Pseudo Genes (multiple problems)::4 of 64
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics