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IDs: 637751 [UID] 2867378 [GenBank] 3389098 [RefSeq]
Bacteria and source DNA were provide by David N. Fredricks MD, (dfredric@fhcrc.org), Fred Hutchinson Cancer Research Center 1100 Fairview Ave North, Box 358080, E4-100, Seattle, WA 98109. Collection of this isolate was funded in part by the National Institutes ... of Health Human Microbiome Project grant, 5 R01 HG005816-03. Coding sequences were predicted using GeneMark and Glimmer3. Intergenic regions not spanned by GeneMark and Glimmer3 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE and non-coding RNA genes by RNAmmer and Rfam. The final gene set is processed through several programs such as Kegg, psortB and Interproscan to determine possible function. Gene product names are determined by BER. Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs. This is a reference genomes for the Human Microbiome Project and the work was funded by the National Institutes of Health (NIH) grant U54 HG004968. more
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