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ASM70162v1

Organism name:
Lachnospiraceae bacterium MC2017 (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: MC2017
BioSample:
SAMN02841162
BioProject:
PRJNA223042
Submitter:
DOE Joint Genome Institute
Date:
2014/06/11
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • genus undefined
GenBank assembly accession:
GCA_000701625.1 (latest)
RefSeq assembly accession:
GCF_000701625.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JNJK01
Assembly method:
Unknown program v. before 2014-03-19
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000

IDs: 183981 [UID] 1108538 [GenBank] 1685098 [RefSeq]

See Genome Information for Lachnospiraceae bacterium MC2017

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 1020371
Source DNA and Organism available from William Kelly (bill.kelly@agresearch.co.nz)
Source DNA available from William Kelly (bill.kelly@agresearch.co.nz)
Organism available from William Kelly (bill.kelly@agresearch.co.nz)
Contacts: William Kelly (bill.kelly@agresearch.co.nz)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Annotation by ... JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
investigation_type::bacteria_archaea
project_name::Lachnospiraceae bacterium MC2017
sequencing_meth::WGS
GOLD Stamp ID::Gi0042759
Gene Calling Method::Prodigal 2.5
Isolation Site::cow rumen
##MIGS-Data-END##

Global statistics

Total sequence length4,255,528
Total ungapped length4,253,118
Gaps between scaffolds0
Number of scaffolds56
Scaffold N50155,050
Scaffold L509
Number of contigs65
Contig N50135,324
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)63

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,255,528564,253,118155,05090

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lachnospiraceae bacterium MC2017Lachnospiraceae bacterium MC2017

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000702065.1Kandleria vitulinasuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type91.300.260.52

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena