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04_NF40_HMP2136v01

Organism name:
Prevotella bivia DNF00650 (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DNF00650
BioSample:
SAMN02850971
BioProject:
PRJNA219670
Submitter:
J. Craig Venter Institute
Date:
2014/09/26
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000759165.1 (latest)
RefSeq assembly accession:
GCF_000759165.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JRNM01
Assembly method:
Newbler v. 2.9
Genome coverage:
81.12x
Sequencing technology:
Illumina

IDs: 213281 [UID] 1305278 [GenBank] 1443638 [RefSeq]

See Genome Information for Prevotella bivia

There are 29 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Date::07/09/2014 17:03:19
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Provider::NCBI
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Annotation Software revision::2.6 (rev. 439576)
Genes::2,043
CDS::1,973
Pseudo Genes::26
rRNAs::3 ( 5S, 16S, 23S )
tRNAs::40
ncRNA::1
Frameshifted Genes::17
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,408,181
Total ungapped length2,408,181
Number of contigs173
Contig N5034,813
Contig L5020
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)173

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,408,1811732,408,18134,81300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Prevotella bivia DNF00650Prevotella bivia

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000177315.1Prevotella bivia JCVIHMP010type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000177315.1Prevotella biviatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9488.6088.01
Best-match type98.9488.6088.01

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna