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SspSR1v1.0

Organism name:
Streptococcus sp. SR1 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: SR1
BioSample:
SAMN02641578
BioProject:
PRJNA165943
Submitter:
JCVI
Date:
2014/01/31
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000526075.1 (latest)
RefSeq assembly accession:
GCF_000526075.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JATR01
Assembly method:
Celera Assembler v. 6.1
Expected final version:
yes
Genome coverage:
90x
Sequencing technology:
Illumina

IDs: 95851 [UID] 899818 [GenBank] 1388728 [RefSeq]

See Genome Information for Streptococcus sp. SR1

Pathogen Detection Resources

History (Show revision history)

Comment

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC.

Global statistics

Total sequence length2,082,993
Total ungapped length2,082,993
Number of contigs29
Contig N50171,751
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)29

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,082,993292,082,993171,75100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus sp. SR1Streptococcus sp. SR1

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003143695.2Streptococcus halitosistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type95.6483.9092.93

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna