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ASM169724v1

Organism name:
Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: DSM:2910
Infraspecific name:
Strain: DSM 2910
BioSample:
SAMN04539466
BioProject:
PRJNA208365
Submitter:
University of Manitoba
Date:
2016/08/02
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001697245.1 (latest)
RefSeq assembly accession:
GCF_001697245.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler v. 2.6
Genome coverage:
25X
Sequencing technology:
Roche/454 GS-FLX Titanium, Illumina HiSeq

IDs: 776821 [UID] 3370168 [GenBank] 3371548 [RefSeq]

See Genome Information for Thermoclostridium stercorarium

There are 6 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_001697245.1-RS_2024_04_07
Annotation Date::04/07/2024 13:26:53
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,673
CDSs (total)::2,611
Genes (coding)::2,567
CDSs (with protein)::2,567
Genes (RNA)::62
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::49
ncRNAs::4
Pseudo Genes (total)::44
CDSs (without protein)::44
Pseudo Genes (ambiguous residues)::0 of 44
Pseudo Genes (frameshifted)::7 of 44
Pseudo Genes (incomplete)::37 of 44
Pseudo Genes (internal stop)::5 of 44
Pseudo Genes (multiple problems)::4 of 44
CRISPR Arrays::9
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,035,622
Total ungapped length3,035,622
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001697255.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP014672.1=NZ_CP014672.1

Assembly statistics

MoleculeTotal
Length
Chromosome 3,035,622

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Thermoclostridium stercorarium subsp. thermolacticum DSM 2910Thermoclostridium stercorarium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000331995.1Thermoclostridium stercorarium subsp. stercorarium DSM 8532type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000331995.1Thermoclostridium stercorariumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.7995.2197.17
Best-match type99.7995.2197.17

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna