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Paen_sp_HGH0030_V1

Organism name:
Paenisporosarcina sp. HGH0030 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: HGH0030
BioSample:
SAMN02596733
BioProject:
PRJNA72489
Submitter:
Broad Institute
Date:
2013/06/14
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000411295.1 (latest)
RefSeq assembly accession:
GCF_000411295.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AGEQ01
Assembly method:
allpaths v. R42721
Genome coverage:
132.0x
Sequencing technology:
Illumina

IDs: 710328 [UID] 705518 [GenBank] 710328 [RefSeq]

See Genome Information for Paenisporosarcina sp. HGH0030

History (Show revision history)

Comment

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC.
Source DNA provided by Thomas M. Schmidt, Dongjuan Dai, John Dover, and Kwi Kim. (University of Michigan Medical School, USA). ... 
Bacteria provided by Thomas M. Schmidt, Dongjuan Dai, John Dover, and Kwi Kim. (University of Michigan Medical School, USA).
Please be aware that the annotation is done automatically with little or no manual curation.
Gene Calling Method: Prodigal.  more

Global statistics

Total sequence length3,522,309
Total ungapped length3,493,880
Gaps between scaffolds0
Number of scaffolds5
Scaffold N502,535,804
Scaffold L501
Number of contigs20
Contig N50278,099
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)20

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,522,30953,493,8802,535,804150

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Paenisporosarcina sp. HGH0030Paenisporosarcina sp. HGH0030

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_027563315.1Paenisporosarcina quisquiliarumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.1460.6867.52

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna