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GKAS_DRAFTv1

Organism name:
Kluyvera ascorbata ATCC 33433 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: ATCC:33433
Infraspecific name:
Strain: ATCC 33433
BioSample:
SAMN02743264
BioProject:
PRJNA65517
Submitter:
UW-GEL
Date:
2014/07/28
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000735365.1 (latest)
RefSeq assembly accession:
GCF_000735365.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JMPL01
Assembly method:
Newbler v. 2.5.3
Expected final version:
yes
Genome coverage:
9.0x
Sequencing technology:
454

IDs: 201111 [UID] 1180848 [GenBank] 1438818 [RefSeq]

See Genome Information for Kluyvera ascorbata

There are 43 assemblies for this organism

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History (Show revision history)

Comment

This WGS draft sequence was annotated by the automated RAST service (http://rast.nmpdr.org/) with manual inspection and clean-up; pseudogene assignments were based solely on the available sequence and may include sequencing artifacts that do not necessarily reflect the biology of ... this organism.  more

Global statistics

Total sequence length4,932,354
Total ungapped length4,932,354
Number of contigs253
Contig N5034,727
Contig L5039
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)253

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,932,3542534,932,35434,72700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Kluyvera ascorbata ATCC 33433Kluyvera ascorbata

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014218705.1Kluyvera sichuanensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type91.1080.6572.63

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected