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Items: 14

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1.

ARS-UCD2.0

ARS-UCD2.0 assembly of the Hereford cattle breed with chrY from Wagyu contributed by UI/WSU

Organism:
Bos taurus (cattle)
Infraspecific name:
Breed: Hereford
Sex:
female
Submitter:
USDA ARS
Date:
2023/07/01
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
Synonyms:
bosTau9
GenBank assembly accession:
GCA_002263795.4 (latest)
RefSeq assembly accession:
GCF_002263795.3 (latest)
IDs:
18107191 [UID] 46273238 [GenBank] 48124668 [RefSeq]

2.

seqoccin.Bt.char.v1.0

Organism:
Bos taurus (cattle)
Infraspecific name:
Strain: mammals
Submitter:
INRAE
Date:
2022/10/29
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_947034695.1 (latest)
RefSeq assembly accession:
n/a
IDs:
14265301 [UID] 37058288 [GenBank]

3.

SNU_Hanwoo_2.0

Organism:
Bos taurus (cattle)
Infraspecific name:
Breed: Hanwoo
Sex:
male
Submitter:
Seoul National University
Date:
2023/09/22
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_028973685.2 (latest)
RefSeq assembly accession:
n/a
IDs:
18738871 [UID] 47846228 [GenBank]

4.

ARS-LIC_NZ_Jersey

Organism:
Bos taurus (cattle)
Infraspecific name:
Breed: Jersey
Sex:
male
Submitter:
USDA ARS
Date:
2021/12/20
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_021234555.1 (latest)
RefSeq assembly accession:
n/a
IDs:
11640501 [UID] 30652288 [GenBank]

5.

ASM3988117v1

Organism:
Bos taurus (cattle)
Infraspecific name:
Breed: Mongolian
Sex:
male
Submitter:
Northwest A&F University
Date:
2024/05/29
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_039881175.1 (latest)
RefSeq assembly accession:
n/a
IDs:
22742411 [UID] 59242878 [GenBank]

6.

YAU_Btau_1.0

Organism:
Bos taurus (cattle)
Infraspecific name:
Breed: Yunling cattle
Sex:
male
Submitter:
Yunnan Agricultural University
Date:
2023/12/05
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_034097375.1 (latest)
RefSeq assembly accession:
n/a
IDs:
19952721 [UID] 50609138 [GenBank]

7.

ROSLIN_BTI_ANK1

Organism:
Bos taurus (cattle)
Submitter:
THE ROSLIN INSTITUTE
Date:
2022/02/18
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_905123885.1 (latest)
RefSeq assembly accession:
n/a
IDs:
12290641 [UID] 32185738 [GenBank]

8.

ROSLIN_BTT_NDA1

Organism:
Bos taurus (cattle)
Submitter:
THE ROSLIN INSTITUTE
Date:
2022/02/18
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_905123515.1 (latest)
RefSeq assembly accession:
n/a
IDs:
12290631 [UID] 32185728 [GenBank]

9.

ARS-LIC_NZ_Holstein-Friesian_1

Organism:
Bos taurus (cattle)
Infraspecific name:
Breed: Holstein-Friesian
Sex:
male
Submitter:
USDA ARS
Date:
2022/01/11
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_021347905.1 (latest)
RefSeq assembly accession:
n/a
IDs:
11739501 [UID] 30898078 [GenBank]

10.

SNNPC3_IISER1.0

Organism:
Bos taurus (cattle)
Submitter:
Indian Institute of Science Education and Research
Date:
2023/10/25
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_033032115.1 (latest)
RefSeq assembly accession:
n/a
IDs:
19390041 [UID] 49323398 [GenBank]

11.

Brown Swiss cow

Organism:
Bos taurus (cattle)
Submitter:
The Genome Analysis Centre
Date:
2021/09/22
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_914753205.1 (latest)
RefSeq assembly accession:
n/a
IDs:
11053661 [UID] 29201468 [GenBank]

12.

Btau_5.0.1

Organism:
Bos taurus (cattle)
Infraspecific name:
Breed: Hereford
Sex:
pooled male and female
Submitter:
Cattle Genome Sequencing International Consortium
Date:
2015/11/19
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000003205.6 (latest)
RefSeq assembly accession:
GCF_000003205.7 (suppressed)
Excluded from RefSeq:
superseded by newer assembly for species
IDs:
585021 [UID] 2689988 [GenBank] 2701278 [RefSeq]

13.

Bos_taurus_UMD_3.1.1

Organism:
Bos taurus (cattle)
Infraspecific name:
Breed: Hereford
Sex:
pooled male and female
Submitter:
Center for Bioinformatics and Computational Biology, University of Maryland
Date:
2014/11/25
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000003055.5 (latest)
RefSeq assembly accession:
GCF_000003055.6 (suppressed)
Release type:
Minor
Excluded from RefSeq:
superseded by newer assembly for species
IDs:
228231 [UID] 1400768 [GenBank] 1425528 [RefSeq]

14.

ASM3037850v1

Organism:
Bos taurus (cattle)
Infraspecific name:
Breed: Wagyu
Sex:
male
Submitter:
Bovine Pangenome Consortium
Date:
2023/07/01
Assembly level:
Chromosome
Genome representation:
partial
GenBank assembly accession:
GCA_030378505.1 (latest)
RefSeq assembly accession:
n/a
Excluded from RefSeq:
partial
IDs:
17261131 [UID] 44251518 [GenBank]

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