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SRR16280108_bin.8_MetaWRAP_v1.3_MAG

Organism name:
Veillonella magna (firmicutes)
Taxonomy check:
OK
Isolate:
SRR16280108_bin.8_MetaWRAP_v1.3_MAG
BioSample:
SAMEA114122793
BioProject:
PRJEB63522
Submitter:
EMG
Date:
2023/07/23
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Excluded from RefSeq:
  • derived from metagenome
GenBank assembly accession:
GCA_959600285.1 (latest)
RefSeq assembly accession:
GCF_959600285.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CAUGKU01
Assembly method:
metaspades v3.15.3
Genome coverage:
34x
Sequencing technology:
Illumina HiSeq 2500

IDs: 17780161 [UID] 45543258 [GenBank] 45657508 [RefSeq]

See Genome Information for Veillonella magna

Pathogen Detection Resources

There are 7 assemblies for this organism

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History (Show revision history)

Comment

This is an EMG-produced Third Party Annotation (TPA) bin derived from the primary whole genome shotgun (WGS) data set SRP340671. This sample represents a Metagenome-Assembled Genome (MAG) from the metagenomic run SRR16280108.

Global statistics

Total sequence length2,089,504
Total ungapped length2,089,504
Number of contigs26
Contig N50127,885
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)26

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,089,504262,089,504127,88500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Veillonella magnaVeillonella magna

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000428745.1Veillonella magna DSM 19857type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000428745.1Veillonella magnatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.2992.6187.85
Best-match type97.2992.6187.85

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna