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IDs: 16778211 [UID] 43121138 [GenBank] 52039378 [RefSeq]
The assembly ddPopNigr1.1 is based on 54x PacBio data and Arima2 Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation ... with purge_dups, and Hi-C based scaffolding with YaHS. The mitochondrial and chloroplast genomes were assembled using OATK. Finally, the primary assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. The order and orientation of contigs along SUPER_2 between 4 Mb and 23 Mb is uncertain. more
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