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The assembly mEriEur2.1 is based on 31x PacBio data and Arima2 Hi-C data generated by the Darwin Tree of Life Project
(https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation ... with purge_dups, and Hi-C based scaffolding with YaHS. The mitochondrial genome was assembled using MitoHiFi. Finally, the primary assembly was analysed and manually improved using TreeVal. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. X chromosome identified based on alignment with Iberian mole (GCA_014898055.3;
https://www.science.org/doi/10.1126/science.aaz2582) and reduced HiC background signal (HiC from male sample, PacBio used for de novo assembly from female sample). The order and orientation of the contigs in the following regions are uncertain: SUPER_2, 164.5 Mb to 176.5 Mb; SUPER_9, 67.5 Mb to 72.5 Mb; SUPER_15, 88.5 Mb to 93.5 Mb; SUPER_17, 42 Mb to 53.5 Mb.  more

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