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1pMM6ns1sI_bin.1.MAG

Organism name:
Alloiococcus otitis (firmicutes)
Taxonomy check:
OK
Isolate:
1pMM6ns1sI_bin.1.MAG
BioSample:
SAMEA110088936
BioProject:
PRJEB47281
Submitter:
NIH/NHGRI
Date:
2022/06/14
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
GenBank assembly accession:
GCA_943912975.1 (latest)
RefSeq assembly accession:
GCF_943912975.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CALTVA01
Genome coverage:
99x

IDs: 12979971 [UID] 33907388 [GenBank] 40764318 [RefSeq]

See Genome Information for Alloiococcus otitis

Pathogen Detection Resources

There are 5 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length1,592,740
Total ungapped length1,592,740
Number of contigs55
Contig N5049,487
Contig L5013
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)55

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced1,592,740551,592,74049,48700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Alloiococcus otitisAlloiococcus otitis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000315445.1Alloiococcus otitis ATCC 51267type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000315445.1Alloiococcus otitistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.8098.2487.70
Best-match type98.8098.2487.70

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna