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Source database (GenBank or RefSeq) File type

ALMONDv2

Organism name:

Prunus dulcis (almond)

BioSample:

SAMEA5704668

BioProject:

PRJEB32994

Submitter:

CNAG

Date:

2019/10/10

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_902201215.1 (latest)

RefSeq assembly accession:

GCF_902201215.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome Pltd

Data displayed for RefSeq version

WGS Project:

CABIKO01

Genome coverage:

800x

IDs: 4930911 [UID] 14559648 [GenBank] 19500628 [RefSeq]

See Genome Information for Prunus dulcis

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_902201215.1	≠	GCF_902201215.1	ALMONDv2	Chromosome	Latest GenBank, Latest RefSeq

Comment

The Prunus dulcis whole genome shotgun (WGS) project has the project accession CABIKO000000000. This version of the project (01) has the accession number CABIKO010000000, and consists of sequences CABIKO010000001-CABIKO010001699.

Global statistics

Total sequence length	227,756,880
Total ungapped length	223,845,747
Gaps between scaffolds	0
Number of scaffolds	692
Scaffold N50	24,375,383
Scaffold L50	4
Number of contigs	4,396
Contig N50	115,247
Contig L50	511
Total number of chromosomes and plasmids	9
Number of component sequences (WGS or clone)	1,700

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	LR694006.1	=	NC_047650.1	0
Chromosome 2	LR694007.1	=	NC_047651.1	0
Chromosome 3	LR694008.1	=	NC_047652.1	0
Chromosome 4	LR694009.1	=	NC_047653.1	0
Chromosome 5	LR694010.1	=	NC_047654.1	0
Chromosome 6	LR694011.1	=	NC_047655.1	0
Chromosome 7	LR694012.1	=	NC_047656.1	0
Chromosome 8	LR694013.1	=	NC_047657.1	0
unplaced	n/a	n/a	n/a	683

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	227,599,157	691	223,688,024	24,375,383	3,704
Chromosome 1	43,996,934	1	43,325,474	43,996,934	596
Chromosome 2	26,138,581	1	25,524,359	26,138,581	464
Chromosome 3	24,073,526	1	23,767,310	24,073,526	405
Chromosome 4	24,375,383	1	23,945,483	24,375,383	473
Chromosome 5	18,233,718	1	17,956,321	18,233,718	235
Chromosome 6	29,596,931	1	29,198,454	29,596,931	501
Chromosome 7	21,340,587	1	21,127,538	21,340,587	300
Chromosome 8	20,428,636	1	20,048,030	20,428,636	325
unplaced	19,414,861	683	18,795,055	40,919	405

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ALMONDv2

See Genome Information for Prunus dulcis

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear