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Source database (GenBank or RefSeq) File type

CavTom2PMs-1.0

Organism name:

Corylus avellana (European hazelnut)

Infraspecific name:

Cultivar: Tombul

BioSample:

SAMEA5541879

BioProject:

PRJEB31933

Submitter:

SUNUM

Date:

2020/11/25

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_901000735.2 (latest)

RefSeq assembly accession:

GCF_901000735.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome Pltd

Data displayed for RefSeq version

Genome coverage:

117x

IDs: 8722601 [UID] 23645088 [GenBank] 46679548 [RefSeq]

See Genome Information for Corylus avellana

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_901000735.2	≠	GCF_901000735.1	CavTom2PMs-1.0	Chromosome	Latest GenBank, Latest RefSeq
GCA_901000735.1	n/a	n/a	Tom2_Illumina_only	Scaffold	Replaced GenBank

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Status::Full annotation
Annotation Name::GCF_901000735.1-RS_2023_09
Annotation Pipeline::NCBI eukaryotic genome annotation pipeline
Annotation Software Version::10.2
URL Organism::Corylus_avellana
Annotation Method::Gnomon; cmsearch; tRNAscan-SE
Features Annotated::Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	369,938,784
Total ungapped length	368,176,123
Gaps between scaffolds	0
Number of scaffolds	12
Scaffold N50	36,653,616
Scaffold L50	5
Number of contigs	14,544
Contig N50	54,257
Contig L50	1,838
Total number of chromosomes and plasmids	12
Number of component sequences (WGS or clone)	12

Molecule name	GenBank sequence		RefSeq sequence
Chromosome ca1	LR899423.1	=	NC_081541.1
Chromosome ca2	LR899424.1	=	NC_081542.1
Chromosome ca3	LR899425.1	=	NC_081543.1
Chromosome ca4	LR899426.1	=	NC_081544.1
Chromosome ca5	LR899427.1	=	NC_081545.1
Chromosome ca6	LR899428.1	=	NC_081546.1
Chromosome ca7	LR899429.1	=	NC_081547.1
Chromosome ca8	LR899430.1	=	NC_081548.1
Chromosome ca9	LR899431.1	=	NC_081549.1
Chromosome ca10	LR899432.1	=	NC_081550.1
Chromosome ca11	LR899433.1	=	NC_081551.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	369,779,143	11	368,016,482	36,653,616	14,532
Chromosome ca1	50,950,907	1	50,705,922	50,950,907	1,994
Chromosome ca2	50,858,233	1	50,583,203	50,858,233	2,231
Chromosome ca3	39,770,678	1	39,598,598	39,770,678	1,474
Chromosome ca4	36,845,065	1	36,673,268	36,845,065	1,437
Chromosome ca5	36,653,616	1	36,485,400	36,653,616	1,479
Chromosome ca6	30,273,198	1	30,132,339	30,273,198	1,202
Chromosome ca7	30,244,496	1	30,095,768	30,244,496	1,040
Chromosome ca8	25,771,640	1	25,653,809	25,771,640	1,031
Chromosome ca9	23,265,644	1	23,178,301	23,265,644	754
Chromosome ca10	22,724,158	1	22,598,938	22,724,158	951
Chromosome ca11	22,421,508	1	22,310,936	22,421,508	939

Assembly

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CavTom2PMs-1.0

See Genome Information for Corylus avellana

Pathogen Detection Resources

History (Show revision history)

Comment

Genome-Annotation-Data

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Assembly Unit Name
Primary Assembly
non-nuclear