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Fusobacterium ulcerans 81A6

Organism name:
Fusobacterium ulcerans ATCC 49185 (fusobacteria)
Taxonomy check:
Inconclusive
Isolate:
Fusobacterium ulcerans 81A6
BioSample:
SAMEA5128838
BioProject:
PRJEB29940
Submitter:
Keio University, School of Medicine
Date:
2019/02/19
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_900683735.1 (latest)
RefSeq assembly accession:
GCF_900683735.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
40x

IDs: 2323761 [UID] 8660468 [GenBank] 8685708 [RefSeq]

See Genome Information for Fusobacterium ulcerans

There are 19 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/13/2024 02:57:04
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,554
CDSs (total)::3,472
Genes (coding)::3,455
CDSs (with protein)::3,455
Genes (RNA)::82
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::57
ncRNAs::3
Pseudo Genes (total)::17
CDSs (without protein)::17
Pseudo Genes (ambiguous residues)::0 of 17
Pseudo Genes (frameshifted)::9 of 17
Pseudo Genes (incomplete)::12 of 17
Pseudo Genes (internal stop)::3 of 17
Pseudo Genes (multiple problems)::5 of 17
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,839,419
Total ungapped length3,839,419
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_900683734.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome LR215979.1=NZ_LR215979.1

Assembly statistics

MoleculeTotal
Length
Chromosome 3,839,419

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Fusobacterium ulcerans ATCC 49185Fusobacterium ulcerans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_003019675.1Fusobacterium ulceranstype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003019675.1Fusobacterium ulceranstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type91.3672.7878.98
Best-match type91.3672.7878.98

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna