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46801_A01

Organism name:
Salmonella enterica (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NCTC5774
BioSample:
SAMEA4007818
BioProject:
PRJEB6403
Submitter:
SC
Date:
2018/08/01
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • RefSeq annotation failed
GenBank assembly accession:
GCA_900455905.1 (latest)
RefSeq assembly accession:
GCF_900455905.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
UGVS01
Genome coverage:
100x

IDs: 1849371 [UID] 6996868 [GenBank] 7031228 [RefSeq]

See Genome Information for Salmonella enterica

There are 533382 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length4,660,289
Total ungapped length4,660,289
Number of contigs2
Contig N504,642,549
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,660,28924,660,2894,642,54900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Salmonella entericaSalmonella enterica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_016028495.1Salmonella entericatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016028495.1Salmonella entericatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.5092.9487.17
Best-match type98.5092.9487.17

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna