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PRJEB22822

Organism name:
Helcococcus massiliensis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: Marseille-P4590
BioSample:
SAMEA104557165
BioProject:
PRJEB22822
Submitter:
URMITE
Date:
2018/02/04
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900258485.1 (latest)
RefSeq assembly accession:
GCF_900258485.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
OGVE01
Genome coverage:
48x

IDs: 1557671 [UID] 6004508 [GenBank] 6016058 [RefSeq]

See Genome Information for Helcococcus massiliensis

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length1,361,080
Total ungapped length1,361,080
Number of contigs11
Contig N50352,751
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)11

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced1,361,080111,361,080352,75100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Helcococcus massiliensisHelcococcus massiliensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_017874475.1Anaerococcus degeneritype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.361.520.95

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected