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IMG-taxon 2724679812 annotated assembly

Organism name:
Desulfurobacterium pacificum (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 15522
BioSample:
SAMN06265339
BioProject:
PRJEB20690
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2023/04/04
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900182835.1 (latest)
RefSeq assembly accession:
GCF_900182835.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FXUB01
Assembly method:
spades v. 3.9.0
Genome coverage:
392x
Sequencing technology:
Illumina HiSeq 2500-1TB

IDs: 16581521 [UID] 42659878 [GenBank] 42826648 [RefSeq]

See Genome Information for Desulfurobacterium pacificum

History (Show revision history)

Comment

Global statistics

Total sequence length1,593,312
Total ungapped length1,593,042
Gaps between scaffolds0
Number of scaffolds11
Scaffold N50291,042
Scaffold L502
Number of contigs12
Contig N50291,042
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)11

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,593,312111,593,042291,04210

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Desulfurobacterium pacificumDesulfurobacterium pacificum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900188395.1Desulfurobacterium atlanticumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.691.561.43

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected