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PRJEB19317

Organism name:
Terribacillus halophilus (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: T-h1
BioSample:
SAMEA78858418
BioProject:
PRJEB19317
Submitter:
URMITE
Date:
2017/02/09
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_900162685.1 (latest)
RefSeq assembly accession:
GCF_900162685.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FUFU01
Genome coverage:
21x

IDs: 1002881 [UID] 4119198 [GenBank] 4136858 [RefSeq]

See Genome Information for Terribacillus halophilus

Pathogen Detection Resources

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length3,456,498
Total ungapped length3,454,870
Gaps between scaffolds0
Number of scaffolds14
Scaffold N502,555,189
Scaffold L501
Number of contigs26
Contig N50289,271
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)26

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced3,456,498143,454,8702,555,189120

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Terribacillus halophilusTerribacillus halophilus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900101385.1Terribacillus halophilustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900215625.1Terribacillus aidingensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type80.0347.6245.02
Best-match type91.3583.5885.21

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna