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Source database (GenBank or RefSeq) File type

26578_F01

Organism name:: Escherichia coli (E. coli)
Taxonomy check:: OK
Infraspecific name:: Strain: NCTC 13441
BioSample:: SAMEA2432036
BioProject:: PRJEB5997
Submitter:: SC
Date:: 2016/11/17
Assembly type:: na
Assembly level:: Chromosome
Genome representation:: full
GenBank assembly accession:: GCA_900119685.1 (latest)
RefSeq assembly accession:: GCF_900119685.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Genome coverage:: 48x

IDs: 893081 [UID] 3736218 [GenBank] 3741428 [RefSeq]

See Genome Information for Escherichia coli

Pathogen Detection Resources

There are 276821 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_900119685.1	=	GCF_900119685.1	26578_F01	Chromosome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Name::GCF_900119685.1-RS_2024_06_12
Annotation Date::06/12/2024 03:47:26
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,276
CDSs (total)::5,161
Genes (coding)::4,911
CDSs (with protein)::4,911
Genes (RNA)::115
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::88
ncRNAs::5
Pseudo Genes (total)::250
CDSs (without protein)::250
Pseudo Genes (ambiguous residues)::0 of 250
Pseudo Genes (frameshifted)::104 of 250
Pseudo Genes (incomplete)::166 of 250
Pseudo Genes (internal stop)::44 of 250
Pseudo Genes (multiple problems)::56 of 250
Pseudo Genes (short protein)::1 of 250
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,335,700
Total ungapped length	5,335,400
Gaps between scaffolds	0
Number of scaffolds	2
Scaffold N50	5,174,631
Scaffold L50	1
Number of contigs	5
Contig N50	5,052,391
Contig L50	1
Total number of chromosomes and plasmids	2
Number of component sequences (WGS or clone)	2

Molecule name	GenBank sequence		RefSeq sequence
Chromosome 1	LT632320.1	=	NZ_LT632320.1
Plasmid p	LT632321.1	=	NZ_LT632321.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	5,335,700	2	5,335,400	5,174,631	3
Chromosome 1	5,174,631	1	5,174,331	5,174,631	3
Plasmid p	161,069	1	161,069	161,069	0

	ANI	Query coverage	Subject coverage
Declared type	99.88	94.74	94.56
Best-match type	99.88	94.74	94.56

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26578_F01

See Genome Information for Escherichia coli

Pathogen Detection Resources

There are 276821 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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