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IMG-taxon 2617270762 annotated assembly

Organism name:
Sphingomonas rubra (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CGMCC 1.9113
BioSample:
SAMN04488241
BioProject:
PRJEB17437
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/11/02
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900115745.1 (latest)
RefSeq assembly accession:
GCF_900115745.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FOXP01
Genome coverage:
254x

IDs: 882751 [UID] 3705248 [GenBank] 4890888 [RefSeq]

See Genome Information for Sphingomonas rubra

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length3,200,202
Total ungapped length3,200,202
Number of contigs25
Contig N50252,988
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)25

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced3,200,202253,200,202252,98800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Sphingomonas rubraSphingomonas rubra

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014199625.1Sphingomonas abacitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.6733.0423.96

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected