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IMG-taxon 2642422540 annotated assembly

Organism name:
Methanolobus profundi (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: Mob M
BioSample:
SAMN04488696
BioProject:
PRJEB17486
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/11/02
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900114835.1 (latest)
RefSeq assembly accession:
GCF_900114835.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FOUJ01
Genome coverage:
359x

IDs: 881231 [UID] 3702208 [GenBank] 4882028 [RefSeq]

See Genome Information for Methanolobus profundi

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length3,107,200
Total ungapped length3,105,899
Gaps between scaffolds0
Number of scaffolds18
Scaffold N50468,684
Scaffold L502
Number of contigs20
Contig N50388,311
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)18

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced3,107,200183,105,899468,68420

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Methanolobus profundiMethanolobus profundi

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_031312595.1Methanolobus sediministype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.7330.0633.36

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected