U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



IMG-taxon 2675903229 annotated assembly

Organism name:
Clostridium uliginosum (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 12992
BioSample:
SAMN05421842
BioProject:
PRJEB17199
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/11/02
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900112485.1 (latest)
RefSeq assembly accession:
GCF_900112485.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FOMG01
Genome coverage:
263x

IDs: 881771 [UID] 3703288 [GenBank] 4870748 [RefSeq]

See Genome Information for Clostridium uliginosum

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length4,080,971
Total ungapped length4,079,272
Gaps between scaffolds0
Number of scaffolds78
Scaffold N50111,486
Scaffold L5011
Number of contigs81
Contig N50100,213
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)78

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced4,080,971784,079,272111,48630

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Clostridium uliginosumClostridium uliginosum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_019431045.1Clostridium weizhouensetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type85.6728.3429.17

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected