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IMG-taxon 2602042026 annotated assembly

Organism name:
Propionispira arboris (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 2179
BioSample:
SAMN05660742
BioProject:
PRJEB16799
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/10/31
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900109225.1 (latest)
RefSeq assembly accession:
GCF_900109225.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FNZK01
Genome coverage:
293x

IDs: 879361 [UID] 3698428 [GenBank] 4881388 [RefSeq]

See Genome Information for Propionispira arboris

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length4,261,607
Total ungapped length4,261,607
Number of contigs40
Contig N50150,889
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)40

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced4,261,607404,261,607150,88900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Propionispira arborisPropionispira arboris

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000381065.1Propionispira raffinosivoranstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type96.6781.0883.63

ANI result

Taxonomy check statusBest match statusComment
OKmismatchAssembly is the type-strain, mismatch is within genus and expected