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IMG-taxon 2617270770 annotated assembly

Organism name:
Alkalimonas amylolytica (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CGMCC 1.3430
BioSample:
SAMN04488051
BioProject:
PRJEB16662
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/10/22
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900107845.1 (latest)
RefSeq assembly accession:
GCF_900107845.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FNRM01
Genome coverage:
266x

IDs: 869121 [UID] 3643598 [GenBank] 4878568 [RefSeq]

See Genome Information for Alkalimonas amylolytica

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length4,060,055
Total ungapped length4,052,805
Gaps between scaffolds0
Number of scaffolds30
Scaffold N50365,272
Scaffold L504
Number of contigs36
Contig N50291,802
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)30

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced4,060,055304,052,805365,27260

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Alkalimonas amylolyticaAlkalimonas amylolytica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_036325985.1Alkalimonas cellulosilyticatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type85.8773.7374.15

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected