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IMG-taxon 2615840634 annotated assembly

Organism name:
Paenibacillus sp. yr247 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: YR247
BioSample:
SAMN04487897
BioProject:
PRJEB16231
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/10/21
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_900103825.1 (latest)
RefSeq assembly accession:
GCF_900103825.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FNIF01
Genome coverage:
238x

IDs: 866441 [UID] 3638228 [GenBank] 4875728 [RefSeq]

See Genome Information for Paenibacillus sp. yr247

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length6,252,761
Total ungapped length6,250,816
Gaps between scaffolds0
Number of scaffolds81
Scaffold N50200,298
Scaffold L507
Number of contigs87
Contig N50192,528
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)81

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced6,252,761816,250,816200,29860

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Paenibacillus sp. yr247Paenibacillus sp. yr247

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_013141715.1Paenibacillus phytorumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.9146.6433.11

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna