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ASM3843511v1

Organism name:
Acinetobacter baumannii (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 7288
BioSample:
SAMN41005237
BioProject:
PRJNA1101874
Submitter:
MRSN BI Team
Date:
2024/04/23
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_038435115.1 (latest)
RefSeq assembly accession:
GCF_038435115.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JBCDXY01
Assembly method:
SPAdes v. 3.14
Expected final version:
yes
Genome coverage:
278x
Sequencing technology:
Illumina NextSeq

IDs: 22436461 [UID] 56732298 [GenBank] 56754868 [RefSeq]

See Genome Information for Acinetobacter baumannii

There are 27891 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::04/18/2024 17:12:10
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,843
CDSs (total)::3,789
Genes (coding)::3,725
CDSs (with protein)::3,725
Genes (RNA)::54
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::46
ncRNAs::5
Pseudo Genes (total)::64
CDSs (without protein)::64
Pseudo Genes (ambiguous residues)::0 of 64
Pseudo Genes (frameshifted)::31 of 64
Pseudo Genes (incomplete)::28 of 64
Pseudo Genes (internal stop)::19 of 64
Pseudo Genes (multiple problems)::12 of 64
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,927,614
Total ungapped length3,927,614
Number of contigs127
Contig N5074,415
Contig L5019
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)127

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,927,6141273,927,61474,41500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Acinetobacter baumanniiAcinetobacter baumannii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_016746035.1Acinetobacter baumanniitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016746035.1Acinetobacter baumanniitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.9084.6685.36
Best-match type97.9084.6685.36

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna