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Lp3.0

Organism name:
Lytechinus pictus (painted urchin)
Isolate:
F3 Inbred
Sex:
male
BioSample:
SAMN39538424
BioProject:
PRJNA1067649
Submitter:
Scripps Institution of Oceanography
Date:
2024/03/07
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_037042905.1 (latest)
RefSeq assembly accession:
GCF_037042905.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAZDCF01
Assembly method:
Hifiasm v. 0.19.8; yahs v. 1.2a.2
Expected final version:
yes
Genome coverage:
120.0x
Sequencing technology:
PacBio Revio; Illumina NovaSeq

IDs: 21699551 [UID] 54615678 [GenBank] 55523308 [RefSeq]

See Genome Information for Lytechinus pictus

Pathogen Detection Resources

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length811,721,768
Total ungapped length811,717,168
Gaps between scaffolds0
Number of scaffolds368
Scaffold N5035,715,200
Scaffold L508
Number of contigs391
Contig N5030,022,000
Contig L5011
Total number of chromosomes and plasmids19
Number of component sequences (WGS or clone)368

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_037042955.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM073226.1=NC_087245.10
Chromosome 2CM073227.1=NC_087246.10
Chromosome 3CM073228.1=NC_087247.10
Chromosome 4CM073229.1=NC_087248.10
Chromosome 5CM073230.1=NC_087249.10
Chromosome 6CM073231.1=NC_087250.10
Chromosome 7CM073232.1=NC_087251.10
Chromosome 8CM073233.1=NC_087252.10
Chromosome 9CM073234.1=NC_087253.10
Chromosome 10CM073235.1=NC_087254.10
Chromosome 11CM073236.1=NC_087255.10
Chromosome 12CM073237.1=NC_087256.10
Chromosome 13CM073238.1=NC_087257.10
Chromosome 14CM073239.1=NC_087258.10
Chromosome 15CM073240.1=NC_087259.10
Chromosome 16CM073241.1=NC_087260.10
Chromosome 17CM073242.1=NC_087261.10
Chromosome 18CM073243.1=NC_087262.10
Chromosome 19CM073244.1=NC_087263.10
unplacedn/an/an/a349

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All811,721,768368811,717,16835,715,200230
Chromosome 144,300,000144,300,00044,300,00000
Chromosome 270,580,802170,580,60270,580,80210
Chromosome 382,431,108182,430,70882,431,10820
Chromosome 432,991,779132,991,57932,991,77910
Chromosome 557,468,504157,468,10457,468,50420
Chromosome 628,517,652128,517,45228,517,65210
Chromosome 749,738,939149,738,73949,738,93910
Chromosome 842,376,555142,375,55542,376,55550
Chromosome 927,750,432127,750,03227,750,43220
Chromosome 1037,180,102137,179,90237,180,10210
Chromosome 1135,715,200135,715,00035,715,20010
Chromosome 1232,129,000132,129,00032,129,00000
Chromosome 1330,022,000130,022,00030,022,00000
Chromosome 1428,770,610128,770,61028,770,61000
Chromosome 1531,298,000131,298,00031,298,00000
Chromosome 1629,425,516129,425,31629,425,51610
Chromosome 1731,958,207131,957,40731,958,20740
Chromosome 1826,260,804126,260,80426,260,80400
Chromosome 1915,790,492115,790,49215,790,49200
unplaced77,016,06634977,015,8662,257,00010