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Source database (GenBank or RefSeq) File type

bDroNov1.hap1

Organism name:

Dromaius novaehollandiae (emu)

Isolate:

bDroNov1

Sex:

female

BioSample:

SAMN39262816

BioProject:

PRJNA1061216

Submitter:

Vertebrate Genomes Project

Date:

2024/02/26

Assembly type:

haploid (haplotype 1)

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_036370855.1 (latest)

RefSeq assembly accession:

GCF_036370855.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAZAQV01

Assembly method:

Hifiasm + Hi-C phasing v. 0.19.3 + galaxy0; yahs v. 1.2a.2 + galaxy1; MitoHiFi v. 3.0

Expected final version:

Genome coverage:

52.0x

Sequencing technology:

PacBio Sequel II HiFi; Arima Hi-C v2

Linked assembly:

GCA_036417515.1 (haplotype 2)

IDs: 21555391 [UID] 54267278 [GenBank] 56177288 [RefSeq]

See Genome Information for Dromaius novaehollandiae

Pathogen Detection Resources

There are 8 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_036370855.1	≠	GCF_036370855.1	bDroNov1.hap1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	1,468,706,110
Total ungapped length	1,468,680,310
Gaps between scaffolds	0
Number of scaffolds	271
Scaffold N50	77,929,039
Scaffold L50	6
Number of contigs	400
Contig N50	24,239,989
Contig L50	21
Total number of chromosomes and plasmids	41
Number of component sequences (WGS or clone)	271

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM072388.1	=	NC_088098.1	0
Chromosome 2	CM072389.1	=	NC_088099.1	0
Chromosome 3	CM072390.1	=	NC_088100.1	0
Chromosome 4	CM072391.1	=	NC_088101.1	0
Chromosome 5	CM072392.1	=	NC_088102.1	0
Chromosome 6	CM072393.1	=	NC_088103.1	0
Chromosome 7	CM072394.1	=	NC_088104.1	0
Chromosome 8	CM072395.1	=	NC_088105.1	0
Chromosome 9	CM072396.1	=	NC_088106.1	0
Chromosome 10	CM072397.1	=	NC_088107.1	0
Chromosome 11	CM072398.1	=	NC_088108.1	0
Chromosome 12	CM072399.1	=	NC_088109.1	0
Chromosome 13	CM072400.1	=	NC_088110.1	0
Chromosome 14	CM072401.1	=	NC_088111.1	0
Chromosome 15	CM072402.1	=	NC_088112.1	0
Chromosome 16	CM072403.1	=	NC_088113.1	0
Chromosome 17	CM072404.1	=	NC_088114.1	0
Chromosome 18	CM072405.1	=	NC_088115.1	0
Chromosome 19	CM072406.1	=	NC_088116.1	0
Chromosome 20	CM072407.1	=	NC_088117.1	0
Chromosome 21	CM072408.1	=	NC_088118.1	0
Chromosome 22	CM072409.1	=	NC_088119.1	0
Chromosome 23	CM072410.1	=	NC_088120.1	0
Chromosome 24	CM072411.1	=	NC_088121.1	0
Chromosome 25	CM072412.1	=	NC_088122.1	0
Chromosome 26	CM072413.1	=	NC_088123.1	0
Chromosome 27	CM072414.1	=	NC_088124.1	0
Chromosome 28	CM072415.1	=	NC_088125.1	0
Chromosome 29	CM072416.1	=	NC_088126.1	0
Chromosome 33	CM072417.1	=	NC_088127.1	0
Chromosome 30	CM072418.1	=	NC_088128.1	0
Chromosome 31	CM072419.1	=	NC_088129.1	0
Chromosome W	CM072420.1	=	NC_088130.1	0
Chromosome 32	CM072421.1	=	NC_088131.1	0
Chromosome Z	CM072422.1	=	NC_088132.1	0
Chromosome 34	CM072423.1	=	NC_088133.1	0
Chromosome 35	CM072424.1	=	NC_088134.1	0
Chromosome 36	CM072425.1	=	NC_088135.1	0
Chromosome 37	CM072426.1	=	NC_088136.1	0
Chromosome 38	CM072427.1	=	NC_088137.1	0
Chromosome 39	CM072428.1	=	NC_088138.1	0
unplaced	n/a	n/a	n/a	230

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,468,706,110	271	1,468,680,310	77,929,039	129
Chromosome 1	219,529,801	1	219,526,601	219,529,801	16
Chromosome 2	170,266,025	1	170,264,425	170,266,025	8
Chromosome 3	131,771,073	1	131,770,073	131,771,073	5
Chromosome 4	87,986,023	1	87,984,823	87,986,023	6
Chromosome 5	77,929,039	1	77,927,839	77,929,039	6
Chromosome 6	49,993,374	1	49,992,774	49,993,374	3
Chromosome 7	49,168,021	1	49,167,621	49,168,021	2
Chromosome 8	43,489,013	1	43,488,013	43,489,013	5
Chromosome 9	36,193,645	1	36,193,645	36,193,645	0
Chromosome 10	30,402,320	1	30,401,520	30,402,320	4
Chromosome 11	28,048,201	1	28,047,801	28,048,201	2
Chromosome 12	27,488,047	1	27,487,847	27,488,047	1
Chromosome 13	25,914,127	1	25,914,127	25,914,127	0
Chromosome 14	25,128,939	1	25,128,739	25,128,939	1
Chromosome 15	23,763,421	1	23,763,021	23,763,421	2
Chromosome 16	22,145,535	1	22,145,535	22,145,535	0
Chromosome 17	20,034,034	1	20,034,034	20,034,034	0
Chromosome 18	16,767,706	1	16,767,706	16,767,706	0
Chromosome 19	16,283,609	1	16,283,409	16,283,609	1
Chromosome 20	14,747,216	1	14,747,216	14,747,216	0
Chromosome 21	13,084,680	1	13,084,480	13,084,680	1
Chromosome 22	11,940,151	1	11,939,551	11,940,151	3
Chromosome 23	11,893,544	1	11,893,544	11,893,544	0
Chromosome 24	10,546,449	1	10,546,049	10,546,449	2
Chromosome 25	9,410,489	1	9,410,489	9,410,489	0
Chromosome 26	9,099,505	1	9,099,105	9,099,505	2
Chromosome 27	8,246,056	1	8,246,056	8,246,056	0
Chromosome 28	5,746,275	1	5,745,475	5,746,275	4
Chromosome 29	4,280,889	1	4,280,489	4,280,889	2
Chromosome 33	1,884,840	1	1,883,840	1,884,840	5
Chromosome 30	3,309,900	1	3,308,900	3,309,900	5
Chromosome 31	2,412,280	1	2,412,280	2,412,280	0
Chromosome W	71,775,622	1	71,773,622	71,775,622	10
Chromosome 32	2,269,930	1	2,269,530	2,269,930	2
Chromosome Z	85,985,397	1	85,984,397	85,985,397	5
Chromosome 34	1,507,783	1	1,507,383	1,507,783	2
Chromosome 35	1,040,538	1	1,040,338	1,040,538	1
Chromosome 36	987,576	1	986,776	987,576	4
Chromosome 37	660,846	1	659,246	660,846	8
Chromosome 38	592,864	1	591,864	592,864	5
Chromosome 39	362,936	1	362,136	362,936	4
unplaced	94,618,391	230	94,617,991	2,642,285	2

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bDroNov1.hap1

See Genome Information for Dromaius novaehollandiae

Pathogen Detection Resources

There are 8 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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