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Source database (GenBank or RefSeq) File type

JC_Emac_rtc_rv5

Organism name:

Eleginops maclovinus (Patagonian blennie)

Infraspecific name:

Ecotype: Puerto Natales

Isolate:

JMC-PN-2008

BioSample:

SAMN34355790

BioProject:

PRJNA917608

Submitter:

catchenlab_notothenioids

Date:

2024/02/01

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_036324505.1 (latest)

RefSeq assembly accession:

GCF_036324505.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAUZQC01

Assembly method:

wtdgb2 v. 2.5; juicer v. 2.5

Expected final version:

yes

Genome coverage:

64.0x

Sequencing technology:

PacBio Sequel II; Hi-C

IDs: 21209721 [UID] 53380938 [GenBank] 54156038 [RefSeq]

See Genome Information for Eleginops maclovinus

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_036324505.1	≠	GCF_036324505.1	JC_Emac_rtc_rv5	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	606,306,633
Total ungapped length	606,116,633
Gaps between scaffolds	0
Number of scaffolds	27
Scaffold N50	26,674,500
Scaffold L50	11
Number of contigs	407
Contig N50	7,582,354
Contig L50	27
Total number of chromosomes and plasmids	25
Number of component sequences (WGS or clone)	27

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM070452.1	=	NC_086349.1	0
Chromosome 2	CM070453.1	=	NC_086350.1	0
Chromosome 3	CM070454.1	=	NC_086351.1	0
Chromosome 4	CM070455.1	=	NC_086352.1	0
Chromosome 5	CM070456.1	=	NC_086353.1	0
Chromosome 6	CM070457.1	=	NC_086354.1	0
Chromosome 7	CM070458.1	=	NC_086355.1	0
Chromosome 8	CM070459.1	=	NC_086356.1	0
Chromosome 9	CM070460.1	=	NC_086357.1	0
Chromosome 10	CM070461.1	=	NC_086358.1	0
Chromosome 11	CM070462.1	=	NC_086359.1	0
Chromosome 12	CM070463.1	=	NC_086360.1	0
Chromosome 13	CM070464.1	=	NC_086361.1	0
Chromosome 14	CM070465.1	=	NC_086362.1	0
Chromosome 15	CM070466.1	=	NC_086363.1	0
Chromosome 16	CM070467.1	=	NC_086364.1	0
Chromosome 17	CM070468.1	=	NC_086365.1	0
Chromosome 18	CM070469.1	=	NC_086366.1	0
Chromosome 19	CM070470.1	=	NC_086367.1	0
Chromosome 20	CM070471.1	=	NC_086368.1	0
Chromosome 21	CM070472.1	=	NC_086369.1	0
Chromosome 22	CM070473.1	=	NC_086370.1	0
Chromosome 23	CM070474.1	=	NC_086371.1	0
Chromosome 24	CM070475.1	=	NC_086372.1	0
unplaced	n/a	n/a	n/a	2

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	606,289,673	26	606,099,673	26,674,500	380
Chromosome 1	28,334,731	1	28,326,731	28,334,731	16
Chromosome 2	28,940,000	1	28,933,000	28,940,000	14
Chromosome 3	27,324,164	1	27,322,664	27,324,164	3
Chromosome 4	37,057,500	1	37,036,000	37,057,500	43
Chromosome 5	28,781,379	1	28,770,879	28,781,379	21
Chromosome 6	26,174,740	1	26,167,240	26,174,740	15
Chromosome 7	26,674,500	1	26,672,000	26,674,500	5
Chromosome 8	22,241,000	1	22,234,000	22,241,000	14
Chromosome 9	29,166,904	1	29,162,904	29,166,904	8
Chromosome 10	22,592,755	1	22,583,755	22,592,755	18
Chromosome 11	25,973,324	1	25,967,824	25,973,324	11
Chromosome 12	29,895,000	1	29,890,000	29,895,000	10
Chromosome 13	24,943,427	1	24,927,427	24,943,427	32
Chromosome 14	15,346,000	1	15,336,000	15,346,000	20
Chromosome 15	22,418,937	1	22,414,937	22,418,937	8
Chromosome 16	24,977,814	1	24,971,814	24,977,814	12
Chromosome 17	17,650,260	1	17,648,260	17,650,260	4
Chromosome 18	29,222,005	1	29,213,005	29,222,005	18
Chromosome 19	25,264,000	1	25,257,000	25,264,000	14
Chromosome 20	31,613,927	1	31,601,427	31,613,927	25
Chromosome 21	17,655,415	1	17,652,915	17,655,415	5
Chromosome 22	24,569,983	1	24,558,983	24,569,983	22
Chromosome 23	28,665,485	1	28,654,985	28,665,485	21
Chromosome 24	10,708,923	1	10,699,923	10,708,923	18
unplaced	97,500	2	96,000	60,500	3

Assembly

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JC_Emac_rtc_rv5

See Genome Information for Eleginops maclovinus

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Assembly Unit Name
Primary Assembly
non-nuclear