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bMelMel2.pri

Organism name:
Melospiza melodia melodia (song sparrow)
Isolate:
bMelMel2
Sex:
female
BioSample:
SAMN35847297
BioProject:
PRJNA1006794
Submitter:
Vertebrate Genomes Project
Date:
2024/01/24
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_035770615.1 (latest)
RefSeq assembly accession:
GCF_035770615.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAYKKP01
Assembly method:
Hifiasm + Hi-C phasing v. 0.18.8 + galaxy1; Bionano Solve v. 3.7; yahs v. 1.2a.2 + galaxy0
Expected final version:
no
Genome coverage:
30.7x
Sequencing technology:
PacBio Sequel II HiFi; Bionano DLS; Arima Hi-C v2
Linked assembly:
GCA_035771015.1 (alternate pseudohaplotype of diploid)

IDs: 21046171 [UID] 52997318 [GenBank] 53840688 [RefSeq]

See Genome Information for Melospiza melodia

Pathogen Detection Resources

There are 8 assemblies for this organism

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History (Show revision history)

Comment

We were unable to identify the 3 smallest microchromosomes

Global statistics

Total sequence length1,541,245,192
Total ungapped length1,540,166,094
Gaps between scaffolds0
Number of scaffolds353
Scaffold N5077,460,261
Scaffold L507
Number of contigs652
Contig N5019,453,098
Contig L5023
Total number of chromosomes and plasmids33
Number of component sequences (WGS or clone)353

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_035770765.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM069555.1=NC_086194.13
Chromosome 2CM069556.1=NC_086195.10
Chromosome 3CM069557.1=NC_086196.14
Chromosome 4CM069558.1=NC_086197.10
Chromosome 5CM069559.1=NC_086198.11
Chromosome 6CM069560.1=NC_086199.11
Chromosome 7CM069561.1=NC_086200.14
Chromosome 8CM069562.1=NC_086201.10
Chromosome 9CM069563.1=NC_086202.10
Chromosome 10CM069564.1=NC_086203.11
Chromosome 11CM069565.1=NC_086204.10
Chromosome 12CM069566.1=NC_086205.10
Chromosome 13CM069567.1=NC_086206.10
Chromosome 14CM069568.1=NC_086207.10
Chromosome 15CM069569.1=NC_086208.10
Chromosome 16CM069570.1=NC_086209.10
Chromosome 17CM069571.1=NC_086210.12
Chromosome 18CM069572.1=NC_086211.10
Chromosome 19CM069573.1=NC_086212.10
Chromosome 20CM069574.1=NC_086213.10
Chromosome 21CM069575.1=NC_086214.10
Chromosome 22CM069576.1=NC_086215.10
Chromosome 23CM069577.1=NC_086216.10
Chromosome 24CM069578.1=NC_086217.10
Chromosome 25CM069579.1=NC_086218.11
Chromosome 26CM069580.1=NC_086219.10
Chromosome 27CM069581.1=NC_086220.10
Chromosome 28CM069582.1=NC_086221.10
Chromosome 29CM069583.1=NC_086222.10
Chromosome 30CM069584.1=NC_086223.10
Chromosome 31CM069585.1=NC_086224.10
Chromosome WCM069586.1=NC_086225.11
Chromosome ZCM069587.1=NC_086226.10
unplacedn/an/an/a302

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule1,541,245,1923531,540,166,09477,460,2612990
Chromosome 1AllAssembled moleculeUnlocalized scaffolds177,020,820174,870,9812,149,839413177,004,163174,854,3242,149,839174,870,981174,870,9811,760,22427270000
Chromosome 2Assembled molecule144,034,8081144,009,766144,034,808150
Chromosome 3AllAssembled moleculeUnlocalized scaffolds141,337,441140,599,127738,314514141,320,799140,582,685738,114140,599,127140,599,127220,88232311000
Chromosome 4Assembled molecule98,388,105198,386,10598,388,105100
Chromosome 5AllAssembled moleculeUnlocalized scaffolds97,442,51697,313,250129,26621197,335,38697,206,120129,26697,313,25097,313,250129,26624240000
Chromosome 6AllAssembled moleculeUnlocalized scaffolds77,642,83977,460,261182,57821177,634,32977,451,751182,57877,460,26177,460,261182,57810100000
Chromosome 7AllAssembled moleculeUnlocalized scaffolds48,520,28331,763,80716,756,47651448,519,05731,763,19416,755,86331,763,80731,763,80713,999,856844000
Chromosome 8Assembled molecule40,833,162140,833,16240,833,16200
Chromosome 9Assembled molecule37,544,995137,544,67137,544,99520
Chromosome 10AllAssembled moleculeUnlocalized scaffolds33,449,64131,521,7201,927,92121133,449,22831,521,3071,927,92131,521,72031,521,7201,927,921330000
Chromosome 11Assembled molecule32,005,917132,005,16332,005,91730
Chromosome 12Assembled molecule28,535,873128,527,90128,535,87310
Chromosome 13Assembled molecule23,122,349123,122,34923,122,34900
Chromosome 14Assembled molecule21,031,278121,030,67821,031,27830
Chromosome 15Assembled molecule20,962,327120,962,32720,962,32700
Chromosome 16Assembled molecule20,781,294120,781,29420,781,29400
Chromosome 17AllAssembled moleculeUnlocalized scaffolds18,878,46017,093,0581,785,40231218,873,83417,090,8321,783,00217,093,05817,093,0581,459,903251312000
Chromosome 18Assembled molecule16,560,389116,560,38916,560,38900
Chromosome 19Assembled molecule16,105,544116,105,53116,105,54410
Chromosome 20Assembled molecule15,447,346115,444,72615,447,34610
Chromosome 21Assembled molecule14,597,642114,597,64214,597,64200
Chromosome 22Assembled molecule13,697,673113,697,67313,697,67300
Chromosome 23Assembled molecule13,012,218113,011,41813,012,21840
Chromosome 24Assembled molecule12,985,511112,985,29812,985,51120
Chromosome 25AllAssembled moleculeUnlocalized scaffolds12,319,15812,220,93998,21921112,316,00012,217,78198,21912,220,93912,220,93998,21912120000
Chromosome 26Assembled molecule10,890,703110,890,10310,890,70330
Chromosome 27Assembled molecule10,860,949110,860,34910,860,94930
Chromosome 28Assembled molecule9,300,13019,298,9309,300,13060
Chromosome 29Assembled molecule9,181,37419,176,2279,181,37430
Chromosome 30Assembled molecule7,646,33417,645,9347,646,33420
Chromosome 31Assembled molecule3,029,24013,025,8403,029,240170
Chromosome WAllAssembled moleculeUnlocalized scaffolds65,294,06559,460,3755,833,69021165,291,80059,458,1105,833,69059,460,37559,460,3755,833,69016160000
Chromosome ZAssembled molecule82,773,674182,010,82782,773,674220
unplacedAssembled molecule166,011,134302165,907,1956,570,095440