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icTriCast1.1

Organism name:
Tribolium castaneum (red flour beetle)
Infraspecific name:
Strain: GA2
Sex:
male
BioSample:
SAMN30135407
BioProject:
PRJNA865805
Submitter:
USDA-ARS Ag100Pest
Date:
2023/09/14
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_031307605.1 (latest)
RefSeq assembly accession:
GCF_031307605.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JANKOB01
Assembly method:
HiFiASM v. 0.14.2-r315
Expected final version:
yes
Genome coverage:
30x
Sequencing technology:
PacBio Sequel
Linked assembly:
GCA_031307295.1 (alternate pseudohaplotype of diploid)

IDs: 18548971 [UID] 47421018 [GenBank] 55878508 [RefSeq]

See Genome Information for Tribolium castaneum

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length241,861,439
Total ungapped length241,858,839
Gaps between scaffolds0
Number of scaffolds149
Scaffold N5020,636,470
Scaffold L505
Number of contigs175
Contig N5016,193,484
Contig L506
Total number of chromosomes and plasmids12
Number of component sequences (WGS or clone)149

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_031307905.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM062400.1=NC_087394.10
Chromosome 2CM062401.1=NC_087395.10
Chromosome 3CM062402.1=NC_087396.10
Chromosome 4CM062403.1=NC_087397.10
Chromosome 5CM062404.1=NC_087398.10
Chromosome 6CM062405.1=NC_087399.10
Chromosome 7CM062406.1=NC_087400.10
Chromosome 8CM062407.1=NC_087401.10
Chromosome 9CM062408.1=NC_087402.10
Chromosome 10CM062409.1=NC_087403.10
Chromosome 11CM062410.1=NC_087404.10
unplacedn/an/an/a137

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All241,845,558148241,842,95820,636,470260
Chromosome 137,460,696137,460,09637,460,69660
Chromosome 226,832,998126,832,69826,832,99830
Chromosome 325,071,153125,071,15325,071,15300
Chromosome 423,115,473123,115,47323,115,47300
Chromosome 520,636,470120,636,47020,636,47000
Chromosome 619,586,254119,586,15419,586,25410
Chromosome 718,717,241118,716,74118,717,24150
Chromosome 817,654,693117,653,99317,654,69370
Chromosome 916,193,484116,193,48416,193,48400
Chromosome 1012,086,266112,086,06612,086,26620
Chromosome 114,896,84014,896,6404,896,84020
unplaced19,593,99013719,593,990997,14200
MoleculeTotal
Length
Mitochondrion MT15,881