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Source database (GenBank or RefSeq) File type

ASM3120184v1

Organism name:: Enterobacter kobei (enterobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: EC1382
BioSample:: SAMN27926465
BioProject:: PRJNA832970
Submitter:: Guangdong university of technology
Date:: 2023/09/06
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_031201845.1 (latest)
RefSeq assembly accession:: GCF_031201845.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Unicycler v. 0.5.0
Expected final version:: yes
Genome coverage:: 44.27x
Sequencing technology:: PacBio RSII; Illumina HiSeq

IDs: 18395361 [UID] 47028998 [GenBank] 47188278 [RefSeq]

See Genome Information for Enterobacter kobei

Pathogen Detection Resources

There are 619 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_031201845.1	=	GCF_031201845.1	ASM3120184v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::09/08/2023 10:48:11
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,577
CDSs (total)::5,460
Genes (coding)::5,307
CDSs (with protein)::5,307
Genes (RNA)::117
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::85
ncRNAs::7
Pseudo Genes (total)::153
CDSs (without protein)::153
Pseudo Genes (ambiguous residues)::0 of 153
Pseudo Genes (frameshifted)::42 of 153
Pseudo Genes (incomplete)::114 of 153
Pseudo Genes (internal stop)::24 of 153
Pseudo Genes (multiple problems)::23 of 153
Pseudo Genes (short protein)::1 of 153
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,669,901
Total ungapped length	5,669,901
Total number of chromosomes and plasmids	4

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP096849.1	=	NZ_CP096849.1
Plasmid pEC1382-1	CP096850.1	=	NZ_CP096850.1
Plasmid pEC1382-2	CP096851.1	=	NZ_CP096851.1
Plasmid pEC1382-3	CP096852.1	=	NZ_CP096852.1

Molecule	Total Length
All	5,669,901
Chromosome	5,084,270
Plasmid pEC1382-1	373,329
Plasmid pEC1382-2	108,996
Plasmid pEC1382-3	103,306

	ANI	Query coverage	Subject coverage
Declared type	99.38	78.40	90.21
Best-match type	99.38	78.40	90.21

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ASM3120184v1

See Genome Information for Enterobacter kobei

Pathogen Detection Resources

There are 619 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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