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ASM3051762v1

Organism name:
Enterococcus faecalis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: EfsC13
BioSample:
SAMN33741195
BioProject:
PRJNA944190
Submitter:
University of Texas at Dallas
Date:
2023/05/16
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_030517625.1 (latest)
RefSeq assembly accession:
GCF_030517625.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome
  • Data displayed for RefSeq version
Assembly method:
Unicycler v. v.0.5.0
Expected final version:
yes
Genome coverage:
398x, 370x
Sequencing technology:
Illumina NextSeq, ONT MinION

IDs: 17711671 [UID] 45385588 [GenBank] 45517418 [RefSeq]

See Genome Information for Enterococcus faecalis

There are 9126 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::07/22/2023 17:01:05
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,062
CDSs (total)::2,983
Genes (coding)::2,919
CDSs (with protein)::2,919
Genes (RNA)::79
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::63
ncRNAs::4
Pseudo Genes (total)::64
CDSs (without protein)::64
Pseudo Genes (ambiguous residues)::0 of 64
Pseudo Genes (frameshifted)::35 of 64
Pseudo Genes (incomplete)::25 of 64
Pseudo Genes (internal stop)::20 of 64
Pseudo Genes (multiple problems)::14 of 64
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,089,487
Total ungapped length3,089,487
Total number of chromosomes and plasmids3

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_030517635.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP124956.1=NZ_CP124956.1
Plasmid p1_EfsC13_rep9cCP124957.1=NZ_CP124957.1
Plasmid p2_EfsC13_rep9bCP124958.1=NZ_CP124958.1

Assembly statistics

MoleculeTotal
Length
All3,089,487
Chromosome 2,938,422
Plasmid p1_EfsC13_rep9c80,817
Plasmid p2_EfsC13_rep9b70,248

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterococcus faecalisEnterococcus faecalis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_022869705.1Enterococcus faecalistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_022869705.1Enterococcus faecalistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1183.8791.22
Best-match type99.1183.8791.22

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna