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mDasNov1.hap2

Organism name:
Dasypus novemcinctus (nine-banded armadillo)
Isolate:
mDasNov1
Sex:
male
BioSample:
SAMN32738980
BioProject:
PRJNA923800
Submitter:
Vertebrate Genomes Project
Date:
2023/07/13
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_030445035.1 (replaced)
RefSeq assembly accession:
GCF_030445035.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAUJUA01
Assembly method:
Hifiasm + Hi-C phasing v. 0.16.1 + galaxy2; Bionano Solve v. 3.7.0 + galaxy0; salsa v. 2.3 + galaxy3; manual curation v. 2023-04-26
Expected final version:
no
Genome coverage:
16.99x
Sequencing technology:
PacBio Sequel II HiFi; Bionano DLS; Arima Hi-C v2

IDs: 17553681 [UID] 44976138 [GenBank] 45081908 [RefSeq]

See Genome Information for Dasypus novemcinctus

Pathogen Detection Resources

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length3,570,966,115
Total ungapped length3,559,491,023
Gaps between scaffolds0
Number of scaffolds539
Scaffold N50130,056,132
Scaffold L5011
Number of contigs1,310
Contig N5014,295,626
Contig L5067
Total number of chromosomes and plasmids32
Number of component sequences (WGS or clone)539

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_030445145.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM059747.1=NC_080673.10
Chromosome 2CM059748.1=NC_080674.10
Chromosome 3CM059749.1=NC_080675.10
Chromosome 4CM059750.1=NC_080676.10
Chromosome 5CM059751.1=NC_080677.10
Chromosome 6CM059752.1=NC_080678.10
Chromosome 7CM059753.1=NC_080679.10
Chromosome 8CM059754.1=NC_080680.12
Chromosome 9CM059755.1=NC_080681.10
Chromosome 10CM059756.1=NC_080682.10
Chromosome 11CM059757.1=NC_080683.14
Chromosome 12CM059758.1=NC_080684.15
Chromosome 13CM059759.1=NC_080685.10
Chromosome 14CM059760.1=NC_080686.10
Chromosome 15CM059761.1=NC_080687.10
Chromosome 16CM059762.1=NC_080688.10
Chromosome 17CM059763.1=NC_080689.10
Chromosome 18CM059764.1=NC_080690.10
Chromosome 19CM059765.1=NC_080691.11
Chromosome 20CM059766.1=NC_080692.11
Chromosome 21CM059767.1=NC_080693.11
Chromosome 22CM059768.1=NC_080694.10
Chromosome 23CM059769.1=NC_080695.11
Chromosome 24CM059770.1=NC_080696.10
Chromosome 25CM059771.1=NC_080697.10
Chromosome 26CM059772.1=NC_080698.10
Chromosome 27CM059773.1=NC_080699.10
Chromosome 28CM059774.1=NC_080700.10
Chromosome 29CM059775.1=NC_080701.10
Chromosome 30CM059776.1=NC_080702.10
Chromosome 31CM059777.1=NC_080703.10
Chromosome XCM059778.1=NC_080704.10
unplacedn/an/an/a492

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule3,570,966,1155393,559,491,023130,056,1327710
Chromosome 1Assembled molecule209,551,7341209,145,753209,551,734220
Chromosome 2Assembled molecule201,519,4951201,339,591201,519,495200
Chromosome 3Assembled molecule187,432,3071187,019,936187,432,307360
Chromosome 4Assembled molecule168,743,0431168,675,523168,743,043180
Chromosome 5Assembled molecule168,293,7891168,236,710168,293,789190
Chromosome 6Assembled molecule138,290,7671138,081,721138,290,767220
Chromosome 7Assembled molecule139,988,0601139,100,560139,988,060200
Chromosome 8AllAssembled moleculeUnlocalized scaffolds135,011,296130,056,1324,955,164312134,786,248129,831,0844,955,164130,056,132130,056,1322,986,75026260000
Chromosome 9Assembled molecule132,154,3931131,916,083132,154,393190
Chromosome 10Assembled molecule130,203,9181129,970,054130,203,918270
Chromosome 11AllAssembled moleculeUnlocalized scaffolds132,396,119127,081,8655,314,254514132,321,698127,026,3605,295,338127,081,865127,081,8652,804,67218135000
Chromosome 12AllAssembled moleculeUnlocalized scaffolds116,717,947112,633,0094,084,938615116,599,145112,514,2074,084,938112,633,009112,633,009841,34420200000
Chromosome 13Assembled molecule114,737,1171114,706,346114,737,117200
Chromosome 14Assembled molecule109,934,7591109,766,364109,934,759170
Chromosome 15Assembled molecule109,683,8951109,679,295109,683,895110
Chromosome 16Assembled molecule97,472,949197,437,07297,472,949100
Chromosome 17Assembled molecule101,926,2701101,823,772101,926,270230
Chromosome 18Assembled molecule88,056,198187,822,59388,056,198330
Chromosome 19AllAssembled moleculeUnlocalized scaffolds86,157,18385,277,713879,47021185,522,77584,643,305879,47085,277,71385,277,713879,47048480000
Chromosome 20AllAssembled moleculeUnlocalized scaffolds55,002,42454,705,911296,51321154,965,39854,668,885296,51354,705,91154,705,911296,513990000
Chromosome 21AllAssembled moleculeUnlocalized scaffolds88,355,60687,381,012974,59421188,038,17487,063,580974,59487,381,01287,381,012974,59430300000
Chromosome 22Assembled molecule76,310,862176,280,36076,310,862190
Chromosome 23AllAssembled moleculeUnlocalized scaffolds73,583,76872,608,737975,03121173,057,07572,219,542837,53372,608,73772,608,737975,03135305000
Chromosome 24Assembled molecule67,619,260167,549,29667,619,260230
Chromosome 25Assembled molecule65,148,191164,848,10165,148,19190
Chromosome 26Assembled molecule63,094,430163,089,46063,094,43070
Chromosome 27Assembled molecule54,781,498154,775,87754,781,498150
Chromosome 28Assembled molecule45,631,648145,571,64745,631,64890
Chromosome 29Assembled molecule40,855,843140,772,88940,855,843110
Chromosome 30Assembled molecule49,640,725148,735,13349,640,725350
Chromosome 31Assembled molecule46,853,353146,028,85246,853,353150
Chromosome XAssembled molecule189,576,8861187,633,107189,576,886950
unplacedAssembled molecule86,240,38249284,194,415417,700300