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C.striata_1.0

Organism name:
Centropristis striata (black sea bass)
Infraspecific name:
Ecotype: Rhode Island
Isolate:
RG_2023a
BioSample:
SAMN31685414
BioProject:
PRJNA900280
Submitter:
Northeastern University
Date:
2023/06/20
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_030273125.1 (latest)
RefSeq assembly accession:
GCF_030273125.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JASAOH01
Assembly method:
Hifiasm v. 0.15.4-r347; HiRise v. 0
Expected final version:
yes
Genome coverage:
25.0x
Sequencing technology:
PacBio CCS; Illumina NovaSeq

IDs: 16969561 [UID] 43577698 [GenBank] 46677938 [RefSeq]

See Genome Information for Centropristis striata

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length926,021,963
Total ungapped length925,988,936
Gaps between scaffolds0
Number of scaffolds92
Scaffold N5039,023,748
Scaffold L5011
Number of contigs433
Contig N509,508,883
Contig L5035
Total number of chromosomes and plasmids24
Number of component sequences (WGS or clone)92

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_030273145.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM059124.1=NC_081517.10
Chromosome 2CM059125.1=NC_081518.10
Chromosome 3CM059126.1=NC_081519.10
Chromosome 4CM059127.1=NC_081520.10
Chromosome 5CM059128.1=NC_081521.10
Chromosome 6CM059129.1=NC_081522.10
Chromosome 7CM059130.1=NC_081523.10
Chromosome 8CM059131.1=NC_081524.10
Chromosome 9CM059132.1=NC_081525.10
Chromosome 10CM059133.1=NC_081526.10
Chromosome 11CM059134.1=NC_081527.10
Chromosome 12CM059135.1=NC_081528.10
Chromosome 13CM059136.1=NC_081529.10
Chromosome 14CM059137.1=NC_081530.10
Chromosome 15CM059138.1=NC_081531.10
Chromosome 16CM059139.1=NC_081532.10
Chromosome 17CM059140.1=NC_081533.10
Chromosome 18CM059141.1=NC_081534.10
Chromosome 19CM059142.1=NC_081535.10
Chromosome 20CM059143.1=NC_081536.10
Chromosome 21CM059144.1=NC_081537.10
Chromosome 22CM059145.1=NC_081538.10
Chromosome 23CM059146.1=NC_081539.10
Chromosome 24CM059147.1=NC_081540.10
unplacedn/an/an/a68

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All926,021,96392925,988,93639,023,7483410
Chromosome 146,365,755146,364,45546,365,755130
Chromosome 245,617,806145,617,00645,617,80680
Chromosome 345,437,359145,436,45945,437,35990
Chromosome 443,113,489143,112,50543,113,489100
Chromosome 542,410,642142,408,74242,410,642190
Chromosome 641,894,633141,893,13341,894,633150
Chromosome 741,338,807141,337,63441,338,807120
Chromosome 840,929,001140,927,67840,929,001140
Chromosome 940,891,055140,889,23240,891,055190
Chromosome 1039,868,367139,866,76739,868,367160
Chromosome 1139,023,748139,022,84839,023,74890
Chromosome 1238,835,999138,834,91238,835,999110
Chromosome 1338,455,635138,453,72538,455,635200
Chromosome 1437,471,414137,469,82737,471,414160
Chromosome 1537,389,559137,388,21337,389,559150
Chromosome 1636,432,694136,431,09436,432,694160
Chromosome 1736,376,519136,374,79636,376,519180
Chromosome 1836,354,236136,352,73636,354,236150
Chromosome 1935,856,960135,855,82735,856,960120
Chromosome 2035,496,874135,495,67435,496,874120
Chromosome 2134,200,995134,199,84934,200,995130
Chromosome 2232,175,207132,173,98432,175,207130
Chromosome 2332,032,266132,030,24332,032,266210
Chromosome 2423,130,971123,129,67123,130,971130
unplaced4,921,972684,921,926309,10820